{
"cells": [
{
"cell_type": "markdown",
"id": "b7689a24",
"metadata": {},
"source": [
"# Generation Scotland: Scottish Family Health Study (GS:SFHS)"
]
},
{
"cell_type": "code",
"execution_count": 1,
"id": "614d3acd",
"metadata": {
"execution": {
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"shell.execute_reply": "2025-07-28T18:55:53.346259Z"
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"tags": [
"remove-input"
]
},
"outputs": [
{
"data": {
"text/markdown": [
">Last modified: 28 Jul 2025"
],
"text/plain": [
"<IPython.core.display.Markdown object>"
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"\n",
"import sys\n",
"import os\n",
"sys.path.append(os.path.abspath('../../scripts/'))\n",
"from data_doc_helper import LPSSource as SS, last_modified\n",
"ss = SS(\"GENSCOT\")\n",
"last_modified()\n"
]
},
{
"cell_type": "markdown",
"id": "378f0be3",
"metadata": {},
"source": [
"## 1. Summary"
]
},
{
"cell_type": "code",
"execution_count": 2,
"id": "6ddc075f",
"metadata": {
"execution": {
"iopub.execute_input": "2025-07-28T18:55:53.357277Z",
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"shell.execute_reply": "2025-07-28T18:55:53.368657Z"
},
"tags": [
"remove-input"
]
},
"outputs": [
{
"data": {
"text/markdown": [
"Generation Scotland (GENSCOT) collects data about participants and their families to improve understanding, prevention and treatment of conditions for current and future generations. "
],
"text/plain": [
"<IPython.core.display.Markdown object>"
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"ss.summary()"
]
},
{
"cell_type": "code",
"execution_count": 3,
"id": "588af130",
"metadata": {
"execution": {
"iopub.execute_input": "2025-07-28T18:55:53.378060Z",
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"shell.execute_reply": "2025-07-28T18:55:54.886678Z"
},
"tags": [
"remove-input"
]
},
"outputs": [
{
"data": {
"text/html": [
"<style type=\"text/css\">\n",
"#T_92a8b th {\n",
" text-align: left;\n",
"}\n",
"#T_92a8b_row0_col0, #T_92a8b_row0_col1, #T_92a8b_row1_col0, #T_92a8b_row1_col1, #T_92a8b_row2_col0, #T_92a8b_row2_col1, #T_92a8b_row3_col0, #T_92a8b_row3_col1, #T_92a8b_row4_col0, #T_92a8b_row4_col1, #T_92a8b_row5_col0, #T_92a8b_row5_col1, #T_92a8b_row6_col0, #T_92a8b_row6_col1, #T_92a8b_row7_col0, #T_92a8b_row7_col1, #T_92a8b_row8_col0, #T_92a8b_row8_col1, #T_92a8b_row9_col0, #T_92a8b_row9_col1, #T_92a8b_row10_col0, #T_92a8b_row10_col1, #T_92a8b_row11_col0, #T_92a8b_row11_col1, #T_92a8b_row12_col0, #T_92a8b_row12_col1 {\n",
" text-align: left;\n",
"}\n",
"</style>\n",
"<table id=\"T_92a8b\" style=\"font-size: 14px\">\n",
" <thead>\n",
" <tr>\n",
" <th id=\"T_92a8b_level0_col0\" class=\"col_heading level0 col0\" >Series Descriptor</th>\n",
" <th id=\"T_92a8b_level0_col1\" class=\"col_heading level0 col1\" >Series-specific Information</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <td id=\"T_92a8b_row0_col0\" class=\"data row0 col0\" >Citation (APA)</td>\n",
" <td id=\"T_92a8b_row0_col1\" class=\"data row0 col1\" >Centre for Medical Informatics, Usher Institute, University of Edinburgh. (2021). <i>Generation Scotland (GENSCOT).</i> UK Longitudinal Linkage Collaboration (UK LLC). <a href=\"https://doi.org/10.71760/ukllc-series-00009\" rel=\"noopener noreferrer\" target=\"_blank\">https://doi.org/10.71760/ukllc-series-00009</a></td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_92a8b_row1_col0\" class=\"data row1 col0\" >Download Citation</td>\n",
" <td id=\"T_92a8b_row1_col1\" class=\"data row1 col1\" > <a href=\"https://api.datacite.org/application/vnd.citationstyles.csl+json/10.71760/ukllc-series-00009\" rel=\"noopener noreferrer\" target=\"_blank\">Citeproc JSON</a> <a href=\"https://api.datacite.org/application/x-bibtex/10.71760/ukllc-series-00009\" rel=\"noopener noreferrer\" target=\"_blank\">BibTeX</a> <a href=\"https://api.datacite.org/application/x-research-info-systems/10.71760/ukllc-series-00009\" rel=\"noopener noreferrer\" target=\"_blank\">RIS</a></td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_92a8b_row2_col0\" class=\"data row2 col0\" >Owner</td>\n",
" <td id=\"T_92a8b_row2_col1\" class=\"data row2 col1\" >University of Edinburgh</td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_92a8b_row3_col0\" class=\"data row3 col0\" >Cohort</td>\n",
" <td id=\"T_92a8b_row3_col1\" class=\"data row3 col1\" >23,960 individuals<br>\n",
"5,573 families</td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_92a8b_row4_col0\" class=\"data row4 col0\" >Age at Recruitment</td>\n",
" <td id=\"T_92a8b_row4_col1\" class=\"data row4 col1\" >18-100 years</td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_92a8b_row5_col0\" class=\"data row5 col0\" >Geographical Coverage - Nations</td>\n",
" <td id=\"T_92a8b_row5_col1\" class=\"data row5 col1\" >Scotland</td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_92a8b_row6_col0\" class=\"data row6 col0\" >Geographical Coverage - Regions</td>\n",
" <td id=\"T_92a8b_row6_col1\" class=\"data row6 col1\" >Nationwide</td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_92a8b_row7_col0\" class=\"data row7 col0\" >Start Date</td>\n",
" <td id=\"T_92a8b_row7_col1\" class=\"data row7 col1\" >2006-10</td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_92a8b_row8_col0\" class=\"data row8 col0\" >Permitted Linkages</td>\n",
" <td id=\"T_92a8b_row8_col1\" class=\"data row8 col1\" >See <a href=\"https://guidebook.ukllc.ac.uk/docs/lps/linkages/lps_linkages\" rel=\"noopener noreferrer\" target=\"_blank\">here</a></td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_92a8b_row9_col0\" class=\"data row9 col0\" >Inclusion in Linkages</td>\n",
" <td id=\"T_92a8b_row9_col1\" class=\"data row9 col1\" >Consent</td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_92a8b_row10_col0\" class=\"data row10 col0\" >Cohort Profile</td>\n",
" <td id=\"T_92a8b_row10_col1\" class=\"data row10 col1\" > <a href=\"https://doi.org/10.1093/ije/dys084\" rel=\"noopener noreferrer\" target=\"_blank\">10.1093/ije/dys084</a></td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_92a8b_row11_col0\" class=\"data row11 col0\" >LPS Homepage</td>\n",
" <td id=\"T_92a8b_row11_col1\" class=\"data row11 col1\" ><p><a href=\"https://www.ed.ac.uk/generation-scotland\">ed.ac.uk</a></p></td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_92a8b_row12_col0\" class=\"data row12 col0\" >Build a Data Request</td>\n",
" <td id=\"T_92a8b_row12_col1\" class=\"data row12 col1\" > <a href=\"https://explore.ukllc.ac.uk/\" rel=\"noopener noreferrer\" target=\"_blank\">https://explore.ukllc.ac.uk/</a></td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n"
],
"text/plain": [
"<pandas.io.formats.style.Styler at 0x230934e0fb0>"
]
},
"execution_count": 3,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"ss.info_table()"
]
},
{
"cell_type": "markdown",
"id": "9a610537",
"metadata": {},
"source": [
"## 2. Linkage Rates"
]
},
{
"cell_type": "code",
"execution_count": 4,
"id": "b577ddf1",
"metadata": {
"execution": {
"iopub.execute_input": "2025-07-28T18:55:54.897513Z",
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"shell.execute_reply": "2025-07-28T18:55:54.908511Z"
},
"tags": [
"remove-input"
]
},
"outputs": [
{
"data": {
"text/markdown": [
"Linkage rates will be displayed for GENSCOT in due course."
],
"text/plain": [
"<IPython.core.display.Markdown object>"
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"ss.linkages_plot()"
]
},
{
"cell_type": "markdown",
"id": "2dcdab37",
"metadata": {},
"source": [
"## 3. Documentation"
]
},
{
"cell_type": "code",
"execution_count": 5,
"id": "4f4df265",
"metadata": {
"execution": {
"iopub.execute_input": "2025-07-28T18:55:54.921044Z",
"iopub.status.busy": "2025-07-28T18:55:54.920043Z",
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"shell.execute_reply": "2025-07-28T18:55:54.931040Z"
},
"tags": [
"remove-input"
]
},
"outputs": [
{
"data": {
"text/markdown": [
"We are currently building a documentation storage system which will host useful documents related to datasets and data owners. We will surface these documents on Guidebook."
],
"text/plain": [
"<IPython.core.display.Markdown object>"
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"ss.documentation()"
]
}
],
"metadata": {
"kernelspec": {
"display_name": "jupbook",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.12.7"
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